nf-core/custom/sratoolsncbisettings @ 0.0.0-3fc6d40
Summary
Test for the presence of suitable NCBI settings or create them on the fly.
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_SRATOOLSNCBISETTINGS } from 'nf-core/custom/sratoolsncbisettings'
License
MIT License
Process
Name
|
CUSTOM_SRATOOLSNCBISETTINGS |
|---|
Input
1 channel
ids
string
|
List of id settings |
|---|
Output
2 channels
#1
ncbi_settings
*.mkfg
file
|
An NCBI user settings file. *.mkfg
|
|---|
#2
versions_sratools
tuple
${task.process}
string
|
The name of the process |
|---|---|
sratools
string
|
The name of the tool |
prefetch --version 2>&1 | grep -Eo '[0-9.]+'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sratools | SRA Toolkit and SDK from NCBI | https://github.com/ncbi/sra-tools |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:08:34 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Fsratoolsncbisettings/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/sratoolsncbisettings/blobs/sha256:d91555c7433d50100e91fc2ef6dbd9a8706f3916ef62351b46d83a3fb61c72e1 |
| Size | 3.0 KB |
| Checksum | sha256:d91555c7433d50100e91fc2ef6dbd9a8706f3916ef62351b46d83a3fb61c72e1 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:16 (UTC) | 4 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:34 (UTC) | 3 | 3.0 KB | |
| 0.0.0-5d5b444 | 21 Apr 2026 15:00:51 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:22 (UTC) | 4 | 2.9 KB |