nf-core/custom/tabulartogseagct @ 0.0.0-0c7146d
Summary
Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA
Get started
Add the following snippet to your workflow script to include this module.
include { CUSTOM_TABULARTOGSEAGCT } from 'nf-core/custom/tabulartogseagct'
License
MIT License
Process
Name
|
CUSTOM_TABULARTOGSEAGCT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing matrix information e.g. [ id:'test' ] |
|---|---|
tabular
file
|
Tabular (e.g. TSV or CSV file) containing a numeric matrix with features (e.g. genes) by row and samples by column. *.{tsv,csv}
|
Output
2 channels
#1
gct
tuple
meta
map
|
Groovy Map containing matrix information e.g. [ id:'test' ] |
|---|---|
*.gct
file
|
GCT format version of input TSV *.{gct}
|
#2
versions_mawk
tuple
${task.process}
string
|
The name of the process |
|---|---|
mawk
string
|
The name of the tool |
mawk --version | sed '1!d;s/mawk //;s/ .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| tabulartogseagct | Convert a TSV or CSV with features by row and observations by column to a GCT format file as consumed by GSEA | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:55:29 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcustom%2Ftabulartogseagct/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/custom/tabulartogseagct/blobs/sha256:efe9c1e31794d5c4b72cc20cf850568db2ac1e4c71bc66c813ccee2408c9ff0b |
| Size | 2.6 KB |
| Checksum | sha256:efe9c1e31794d5c4b72cc20cf850568db2ac1e4c71bc66c813ccee2408c9ff0b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:21 (UTC) | 2 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:39 (UTC) | 1 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:29 (UTC) | 1 | 2.6 KB |