nf-core/cutadapt @ 0.0.0-6c4ed3a
Summary
Removes adapter sequences from sequencing reads
Get started
Add the following snippet to your workflow script to include this module.
include { CUTADAPT } from 'nf-core/cutadapt'
License
MIT License
Process
Name
|
CUTADAPT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively. *.{fq,fastq,fq.gz,fastq.gz}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
cutadapt log file *cutadapt.log
|
#2
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.trim.fastq.gz
file
|
The trimmed/modified fastq reads *fastq.gz
|
#3
versions_cutadapt
tuple
${task.process}
string
|
The name of the process |
|---|---|
cutadapt
string
|
The name of the tool |
cutadapt --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| cutadapt | Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads. | https://cutadapt.readthedocs.io/en/stable/index.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:12:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcutadapt/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cutadapt/blobs/sha256:2f51b412d87d0593a67f533c4b702fc475e39541081db494ff01bee68e26a944 |
| Size | 3.0 KB |
| Checksum | sha256:2f51b412d87d0593a67f533c4b702fc475e39541081db494ff01bee68e26a944 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:23 (UTC) | 3 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:41 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:33 (UTC) | 3 | 3.0 KB |