Nextflow Modules
Showing module(s) with keyword "adapter"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/chelae/trim | Process | trimming quality control fastq adapter umi | Adapter and quality trimming of short-read FASTQ data using chelae. |
| nf-core/cutadapt | Process | adapter primers poly-A tails trimming fastq | Removes adapter sequences from sequencing reads |
| nf-core/hifiadapterfilt/downloaddb | Process | pacbio hifi adapter blast database download | Downloads the pre-built PacBio adapter BLAST database from the HiFiAdapterFilt GitHub repository. The database contains two adapter sequences: NGB00972.1 (Pacific Biosciences Blunt Adapter, 45 bp) and NGB00973.1 (C2 Primer, 35 bp). This module is consumed by hifiadapterfilt/hifiadapterfilt as a prerequisite to provide the BLAST database for adapter detection. |
| nf-core/hifiadapterfilt/hifiadapterfilt | Process | pacbio hifi adapter filtering long reads ccs | Remove adapter sequences from PacBio HiFi (CCS) reads using BLAST-based detection. Produces filtered FASTQ output, filtering statistics, BLAST hits, and a list of blocked read IDs. |
| nf-core/porechop/abi | Process | porechop_abi adapter nanopore | Extension of Porechop whose purpose is to process adapter sequences in ONT reads. |
| nf-core/porechop/porechop | Process | adapter nanopore demultiplexing | Adapter removal and demultiplexing of Oxford Nanopore reads |