nf-core/cutesv @ 0.0.0-6c4ed3a
Summary
structural-variant calling with cutesv
Get started
Add the following snippet to your workflow script to include this module.
include { CUTESV } from 'nf-core/cutesv'
License
MIT License
Process
Name
|
CUTESV |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bam
file
|
BAM file *.bam
|
bai
file
|
Index of BAM file *.bai
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'fasta' ] |
|---|---|
fasta
file
|
Reference database in FASTA format |
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.vcf
file
|
VCF file containing called variants from CuteSV *.vcf
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| cutesv | a clustering-and-refinement method to analyze the signatures to implement sensitive SV detection. | https://github.com/tjiangHIT/cuteSV |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:12:24 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fcutesv/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/cutesv/blobs/sha256:e05c27adfd9a5c83507d09c6e4cebafe70b92401ccd61b1683379d28794e2a96 |
| Size | 2.4 KB |
| Checksum | sha256:e05c27adfd9a5c83507d09c6e4cebafe70b92401ccd61b1683379d28794e2a96 |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:12:24 (UTC) | 2 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:08:42 (UTC) | 2 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:55:35 (UTC) | 5 | 2.4 KB |