Nextflow Registry | nf-core/deeptools/plotcorrelation@0.0.0-6c4ed3a

nf-core/deeptools/plotcorrelation @ 0.0.0-6c4ed3a

Visualises sample correlations using a compressed matrix generated by mutlibamsummary or multibigwigsummary as input.

corrrelation matrix heatmap scatterplot

Latest version: 0.0.0-6c4ed3a

Total downloads: 9

Source: nf-core/modules

Authors: @tamara-hodgetts @chris-cheshire @joseespinosa

Maintainers: @tamara-hodgetts @chris-cheshire @joseespinosa

Visualises sample correlations using a compressed matrix generated by mutlibamsummary or multibigwigsummary as input.

Add the following snippet to your workflow script to include this module.

include { DEEPTOOLS_PLOTCORRELATION } from 'nf-core/deeptools/plotcorrelation'

MIT License

Process

`Name`	`DEEPTOOLS_PLOTCORRELATION`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`matrix` file	compressed matrix file produced by mutlibamsummary or multibigwigsummary `*.{npz}`

`method` string	Correlation coefficient to use for heatmap or scatterplot generation `{spearman,pearson}`

`plot_type` string	Type of output plot to display sample correlation `{heatmap,scatterplot}`

Output 3 channels

#1 pdf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.pdf` file	Output figure containing resulting plot `*.{plotCorrelation.pdf}`

#2 matrix tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tab` file	Tab-separated file containing a matrix of pairwise correlations `*.{plotCorrelation.mat.tab}`

#3 versions_deeptools tuple

`${task.process}` string	The name of the process
`deeptools` string	The name of the tool
`plotCorrelation --version \| sed "s/plotCorrelation //g"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
deeptools	A set of user-friendly tools for normalization and visualization of deep-sequencing data	n/a

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:13:56 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fplotcorrelation/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/plotcorrelation/blobs/sha256:89e0fec4bef7696da054aad9c8f1f8d8895fe22f09d27f544b51ee65a2885315
Size	2.9 KB
Checksum	sha256:89e0fec4bef7696da054aad9c8f1f8d8895fe22f09d27f544b51ee65a2885315
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:13:56 (UTC)	3	2.9 KB
0.0.0-3fc6d40	22 Apr 2026 15:10:07 (UTC)	3	2.9 KB
0.0.0-0c7146d	08 Apr 2026 18:57:05 (UTC)	3	2.9 KB