Nextflow Modules
Showing module(s) with keyword "matrix"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/affy/justrma | Process | affy microarray expression matrix | Read CEL files into an ExpressionSet and generate a matrix |
| nf-core/custom/matrixfilter | Process | matrix filter abundance na | filter a matrix based on a minimum value and numbers of samples that must pass. |
| nf-core/deeptools/computematrix | Process | genome regions scores matrix | calculates scores per genome regions for other deeptools plotting utilities |
| nf-core/deeptools/computematrixoperations | Process | genome regions genomics matrix | Modify computeMatrix output with computeMatrixOperations, e.g. filterStrand, filterValues, relabel, subset or sort. The subcommand is set with `ext.args`, its options with `ext.args2`. Subcommands that take several matrices (rbind, cbind) or write no matrix (info, dataRange) are not supported. |
| nf-core/deeptools/multibigwigsummary | Process | bigwig deeptools plot heatmap matrix | Computes the average scores for each of the files in every genomic region |
| nf-core/deeptools/plotcorrelation | Process | corrrelation matrix heatmap scatterplot | Visualises sample correlations using a compressed matrix generated by mutlibamsummary or multibigwigsummary as input. |
| nf-core/deeptools/plotheatmap | Process | plot heatmap scores matrix | plots values produced by deeptools_computematrix as a heatmap |
| nf-core/deeptools/plotpca | Process | PCA matrix bam bigwig | Generates principal component analysis (PCA) plot using a compressed matrix generated by multibamsummary or multibigwigsummary as input. |
| nf-core/deeptools/plotprofile | Process | plot profile scores matrix | plots values produced by deeptools_computematrix as a profile plot |
| nf-core/snpdists | Process | snp dist distance matrix | Pairwise SNP distance matrix from a FASTA sequence alignment |
| nf-core/summarizedexperiment/summarizedexperiment | Process | gene transcript sample matrix assay | SummarizedExperiment container |