nf-core/deeptools/plotfingerprint @ 0.0.0-6c4ed3a
Summary
plots cumulative reads coverages by BAM file
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPTOOLS_PLOTFINGERPRINT } from 'nf-core/deeptools/plotfingerprint'
License
MIT License
Process
Name
|
DEEPTOOLS_PLOTFINGERPRINT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
bams
file
|
BAM files *.bam
|
bais
file
|
Corresponding BAM file indexes *.bam.bai
|
Output
4 channels
#1
pdf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.pdf
file
|
Output figure containing resulting plot *.{plotFingerprint.pdf}
|
#2
matrix
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.raw.txt
file
|
Output file summarizing the read counts per bin *.{plotFingerprint.raw.txt}
|
#3
metrics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.qcmetrics.txt
file
|
file containing BAM file quality metrics *.{qcmetrics.txt}
|
#4
versions_deeptools
tuple
${task.process}
string
|
The name of the process |
|---|---|
deeptools
string
|
The name of the tool |
plotFingerprint --version | sed "s/plotFingerprint //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deeptools | A set of user-friendly tools for normalization and visualization of deep-sequencing data | n/a |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:13:57 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeeptools%2Fplotfingerprint/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deeptools/plotfingerprint/blobs/sha256:8b4363308eda7ff328fb25d193bb97f03e6350868cec306e0d5ad0952d0e5eb1 |
| Size | 2.7 KB |
| Checksum | sha256:8b4363308eda7ff328fb25d193bb97f03e6350868cec306e0d5ad0952d0e5eb1 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:13:57 (UTC) | 3 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:09 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:57:07 (UTC) | 4 | 2.7 KB |