Nextflow Modules
Showing module(s) with keyword "plot"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/blobtk/plot | Process | png svg btk blobtoolkit plot | Creates differing styles of blobplots depending on provided arguments. |
| nf-core/deeptools/multibigwigsummary | Process | bigwig deeptools plot heatmap matrix | Computes the average scores for each of the files in every genomic region |
| nf-core/deeptools/plotfingerprint | Process | plot fingerprint cumulative coverage bam | plots cumulative reads coverages by BAM file |
| nf-core/deeptools/plotheatmap | Process | plot heatmap scores matrix | plots values produced by deeptools_computematrix as a heatmap |
| nf-core/deeptools/plotprofile | Process | plot profile scores matrix | plots values produced by deeptools_computematrix as a profile plot |
| nf-core/fasta_explore_search_plot_tidk | Workflow | genomics telomere repeat search plot | Uses Telomere Identification toolKit (TIDK) to identify the frequency of telomeric repeats along a sliding window for each sequence in the input fasta file. Results are presented in TSV and SVG formats. The user can specify an a priori sequence for identification. Possible a posteriori sequences are also explored and the most frequent sequence is used for identification similar to the a priori sequence. seqkit/seq and seqkit/sort modules are also included to filter out small sequences and sort sequences by length. |
| nf-core/fasta_gxf_busco_plot | Workflow | genome annotation busco plot | Runs BUSCO for input assemblies and their annotations in GFF/GFF3/GTF format, and creates summary plots using `busco --plot` |
| nf-core/krona/ktimportkrona | Process | plot taxonomy interactive html visualisation krona chart | Collect multiple krona reports into a single html file |
| nf-core/krona/ktimporttaxonomy | Process | plot taxonomy interactive html visualisation krona chart | KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot. |
| nf-core/krona/ktimporttext | Process | plot taxonomy interactive html visualisation krona chart metagenomics | Creates a Krona chart from text files listing quantities and lineages. |
| nf-core/last/dotplot | Process | LAST plot pair alignment MAF | Makes a dotplot (Oxford Grid) of pair-wise sequence alignments |
| nf-core/octopusv/plot | Process | summary structural variant statistics plot | Plot structural variant statistics using octopusv stat output |
| nf-core/octopusv/plotcircos | Process | structural variant circos plot visualisation | Draw a genome-wide structural variant Circos plot from an OctopuSV SVCF file. |
| nf-core/shinyngs/staticdifferential | Process | rnaseq plot differential shinyngs | Make plots for interpretation of differential abundance statistics |
| nf-core/shinyngs/staticexploratory | Process | exploratory plot boxplot density PCA | Make exploratory plots for analysis of matrix data, including PCA, Boxplots and density plots |
| nf-core/tidk/plot | Process | genomics telomere search plot | Plots telomeric repeat frequency against sliding window location using data produced by `tidk/search` |