nf-core/deepvariant/vcfstatsreport @ 0.0.0-0c7146d
Summary
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data
Get started
Add the following snippet to your workflow script to include this module.
include { DEEPVARIANT_VCFSTATSREPORT } from 'nf-core/deepvariant/vcfstatsreport'
License
MIT License
Process
Name
|
DEEPVARIANT_VCFSTATSREPORT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF file {*.vcf,vcf.gz,bcf,bcf.gz}
|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}.visual_report.html
file
|
Visual report in HTML format *.html
|
#2
versions_deepvariant
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
deepvariant
string
|
The tool name |
/opt/deepvariant/bin/run_deepvariant --version | sed 's/^.*version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| deepvariant | DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data | https://github.com/google/deepvariant |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 18:57:23 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdeepvariant%2Fvcfstatsreport/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/deepvariant/vcfstatsreport/blobs/sha256:bb10bffadfc73e31cbfca2f1a319acb4c01b284b42ba03afa01e1a71abd4fb38 |
| Size | 2.4 KB |
| Checksum | sha256:bb10bffadfc73e31cbfca2f1a319acb4c01b284b42ba03afa01e1a71abd4fb38 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:57:23 (UTC) | 3 | 2.4 KB |