nf-core/diamond/makedb @ 0.0.0-6c4ed3a
Summary
Builds a DIAMOND database
Get started
Add the following snippet to your workflow script to include this module.
include { DIAMOND_MAKEDB } from 'nf-core/diamond/makedb'
License
MIT License
Process
Name
|
DIAMOND_MAKEDB |
|---|
Input
4 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Input fasta file *.{fa,fasta,fa.gz,fasta.gz}
|
taxonmap
file
|
Optional mapping file of NCBI protein accession numbers to taxon ids (gzip compressed), required for taxonomy functionality. *.gz
|
|---|
taxonnodes
file
|
Optional NCBI taxonomy nodes.dmp file, required for taxonomy functionality. *.dmp
|
|---|
taxonnames
file
|
Optional NCBI taxonomy names.dmp file, required for taxonomy functionality. *.dmp
|
|---|
Output
2 channels
#1
db
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.dmnd
file
|
File of the indexed DIAMOND database *.dmnd
|
#2
versions_diamond
tuple
${task.process}
string
|
The name of the process |
|---|---|
diamond
string
|
The name of the tool |
diamond --version | sed 's/diamond version //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| diamond | Accelerated BLAST compatible local sequence aligner | https://github.com/bbuchfink/diamond |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:14:12 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdiamond%2Fmakedb/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/diamond/makedb/blobs/sha256:820f05b236d636ce9458045e526d507b7adceaaffdb2e3a3a1196edb59b1f46e |
| Size | 2.7 KB |
| Checksum | sha256:820f05b236d636ce9458045e526d507b7adceaaffdb2e3a3a1196edb59b1f46e |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:12 (UTC) | 4 | 2.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:21 (UTC) | 3 | 2.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:57:35 (UTC) | 3 | 2.6 KB |