Nextflow Registry | nf-core/doubletdetection@0.0.0-6c4ed3a

nf-core/doubletdetection @ 0.0.0-6c4ed3a

Doublet detection in single-cell RNA-seq data

single-cell doublets doublet_detection

Latest version: 0.0.0-be790aa

Total downloads: 10

Source: nf-core/modules

Authors: @LeonHafner

Maintainers: @LeonHafner

Doublet detection in single-cell RNA-seq data

Add the following snippet to your workflow script to include this module.

include { DOUBLETDETECTION } from 'nf-core/doubletdetection'

MIT License

Process

`Name`	`DOUBLETDETECTION`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`h5ad` file	H5AD anndata object `*.h5ad`

Output 3 channels

#1 h5ad tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.h5ad` file	H5AD anndata object `*.h5ad`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 predictions tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.pkl` file	pandas dataframe containing the doublet classification `*.pkl`

Tool	Description	Homepage
doubletdetection	Doublet detection in single-cell RNA-seq data	n/a

Version	0.0.0-6c4ed3a
Commit ID	be790aafaa178554b403f862164eb27042f0b35a
Release Date	23 Apr 2026 15:14:17 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fdoubletdetection/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/doubletdetection/blobs/sha256:83492463f56e7d2f8321374de4e105783fa1602a9a24b1bfa782f17d4910d672
Size	2.9 KB
Checksum	sha256:83492463f56e7d2f8321374de4e105783fa1602a9a24b1bfa782f17d4910d672
Downloads	3

Version	Date	Downloads	Size
0.0.0-be790aa	24 Apr 2026 15:00:45 (UTC)	3	2.9 KB
0.0.0-6c4ed3a	23 Apr 2026 15:14:17 (UTC)	3	2.9 KB
0.0.0-0c7146d	08 Apr 2026 18:57:42 (UTC)	4	2.8 KB