nf-core/dssp/mkdssp @ 0.0.0-0c7146d
Summary
Calculates secondary structure assignments from PDB files using mkdssp (DSSP). DSSP is a standard tool for assigning secondary structure to amino acids in protein structures.
Get started
Add the following snippet to your workflow script to include this module.
include { DSSP_MKDSSP } from 'nf-core/dssp/mkdssp'
License
MIT License
Process
Name
|
DSSP_MKDSSP |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
pdb
file
|
Protein structure file in PDB format *.pdb
|
format
string
|
Format for the output file |
|---|
Output
2 channels
#1
dssp
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.{dssp,mmcif}
file
|
File containing secondary structure output in dssp or mmCIF format *.{dssp,mmcif}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| dssp | Calculates secondary structure information from PDB files. | https://github.com/PDB-REDO/dssp |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 18:58:00 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fdssp%2Fmkdssp/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/dssp/mkdssp/blobs/sha256:992aaac5493dca85c3e10a69c1412346e407ce8b1b51d0692497dc41576e634d |
| Size | 2.5 KB |
| Checksum | sha256:992aaac5493dca85c3e10a69c1412346e407ce8b1b51d0692497dc41576e634d |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:29 (UTC) | 3 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:00 (UTC) | 3 | 2.5 KB |