nf-core/eagle2 @ 0.0.0-3fc6d40
Summary
Perform phasing of genotyped data with or without a reference panel
Get started
Add the following snippet to your workflow script to include this module.
include { EAGLE2 } from 'nf-core/eagle2'
License
MIT License
Process
Name
|
EAGLE2 |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input
file
|
Vcf file containing genotyped cohort or target samples to phase *.{vcf,vcf.gz,bcf}
|
index
file
|
Input file index *.{csi,tbi}
|
ref_vcf
file
|
Reference panel to phase the genotyped cohort *.{vcf,vcf.gz,bcf}
|
ref_index
file
|
Reference panel index *.{csi,tbi}
|
map
file
|
Genetic map file *.{txt,txt.gz,map,map.gz}
|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
phased_variants
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.{vcf,vcf.gz,bcf}
file
|
Input phased variants *.{vcf,vcf.gz,bcf}
|
| Tool | Description | Homepage |
|---|---|---|
| eagle2 | The Eagle software estimates haplotype phase either within a genotyped cohort or using a phased reference panel. | https://alkesgroup.broadinstitute.org/Eagle/ |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:10:36 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Feagle2/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/eagle2/blobs/sha256:9733267766e1b7a96f768fbe2c43930b3e64d2097af6b5ebd889a227107b1687 |
| Size | 3.0 KB |
| Checksum | sha256:9733267766e1b7a96f768fbe2c43930b3e64d2097af6b5ebd889a227107b1687 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:35 (UTC) | 4 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:36 (UTC) | 3 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:07 (UTC) | 4 | 2.9 KB |