nf-core/elprep/merge @ 0.0.0-6c4ed3a
Summary
Merge split bam/sam chunks in one file
Get started
Add the following snippet to your workflow script to include this module.
include { ELPREP_MERGE } from 'nf-core/elprep/merge'
License
MIT License
Process
Name
|
ELPREP_MERGE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
List of BAM/SAM chunks to merge *.{bam,sam}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
output/**.{bam,sam}
file
|
Merged BAM/SAM file *.{bam,sam}
|
#2
versions_elprep
tuple
${task.process}
string
|
The name of the process |
|---|---|
elprep
string
|
The name of the tool |
elprep 2>&1 | sed -n '2s/^.*version //;s/ compiled.*$//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| elprep | elPrep is a high-performance tool for preparing .sam/.bam files for variant calling in sequencing pipelines. It can be used as a drop-in replacement for SAMtools/Picard/GATK4. | https://github.com/ExaScience/elprep |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:14:46 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Felprep%2Fmerge/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/elprep/merge/blobs/sha256:e0d70ab11834691ab0fd52ace39674b3117d3de3e746b58c3fa6aba5a93ccf83 |
| Size | 2.4 KB |
| Checksum | sha256:e0d70ab11834691ab0fd52ace39674b3117d3de3e746b58c3fa6aba5a93ccf83 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:46 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:45 (UTC) | 1 | 2.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:24 (UTC) | 4 | 2.4 KB |