nf-core/endorspy @ 0.0.0-6c4ed3a
Summary
endorS.py calculates endogenous DNA from samtools flagstat files and print to screen
Get started
Add the following snippet to your workflow script to include this module.
include { ENDORSPY } from 'nf-core/endorspy'
License
MIT License
Name
|
ENDORSPY |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
stats_raw
file
|
output of samtools flagstat in a txt file, assumes no quality filtering nor duplicate removal performed |
stats_qualityfiltered
file
|
output of samtools flagstat in a txt file, assumes some form of quality or length filtering has been performed, must be provided with at least one of the options -r or -d |
stats_deduplicated
file
|
output of samtools flagstat in a txt file, whereby duplicate removal has been performed on the input reads |
json
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_mqc.json
file
|
file with the endogenous DNA calculation tailored for multiQC *_mqc.json
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| endorspy | endorS.py calculates percent on target and/or clonality from samtools flagstat files and print to screen | https://github.com/aidaanva/endorS.py |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:14:54 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fendorspy/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/endorspy/blobs/sha256:4cede5b68ae549675e80fa592398325442c7adc77e37ed5f579911503bb0673c |
| Size | 3.2 KB |
| Checksum | sha256:4cede5b68ae549675e80fa592398325442c7adc77e37ed5f579911503bb0673c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:54 (UTC) | 3 | 3.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:53 (UTC) | 3 | 3.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:38 (UTC) | 4 | 3.2 KB |