nf-core/ensemblvep/download @ 0.0.0-6c4ed3a
Summary
Ensembl Variant Effect Predictor (VEP). The cache downloading options are controlled through task.ext.args.
Get started
Add the following snippet to your workflow script to include this module.
include { ENSEMBLVEP_DOWNLOAD } from 'nf-core/ensemblvep/download'
License
MIT License
Process
Name
|
ENSEMBLVEP_DOWNLOAD |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
assembly
string
|
Genome assembly |
species
string
|
Specie |
cache_version
string
|
cache version |
preflight_check
boolean
|
Whether to check that the expected cache file is listed in the Ensembl CHECKSUMS file before downloading |
|---|
Output
3 channels
#1
cache
tuple
meta
file
|
cache *
|
|---|---|
prefix
file
|
cache *
|
#2
versions_ensemblvep
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
ensemblvep
string
|
The tool name |
vep --help | sed -n '/ensembl-vep/s/.*: //p'
eval
|
The command used to generate the version of the tool |
#3
versions_perlmathcdf
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
perl-math-cdf
string
|
The name of the tool |
perl -MMath::CDF -e 'print \$Math::CDF::VERSION'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ensemblvep | VEP determines the effect of your variants (SNPs, insertions, deletions, CNVs or structural variants) on genes, transcripts, and protein sequence, as well as regulatory regions. | https://www.ensembl.org/info/docs/tools/vep/index.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:14:56 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fensemblvep%2Fdownload/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/ensemblvep/download/blobs/sha256:7406cf848b54c1dca6598c109b823990a55d57d1e1dc6d5635c7c2362513f7c4 |
| Size | 5.8 KB |
| Checksum | sha256:7406cf848b54c1dca6598c109b823990a55d57d1e1dc6d5635c7c2362513f7c4 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:14:56 (UTC) | 3 | 5.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:39 (UTC) | 2 | 5.8 KB |