nf-core/epang/place @ 0.0.0-6c4ed3a
Summary
phylogenetic placement of query sequences in a reference tree
Get started
Add the following snippet to your workflow script to include this module.
include { EPANG_PLACE } from 'nf-core/epang/place'
License
MIT License
Name
|
EPANG_PLACE |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
queryaln
file
|
aligned query sequences in any supported format including phylip and fasta, may be gzipped *
|
referencealn
file
|
reference alignment in any supported format including phylip and fasta, may be gzipped *
|
referencetree
file
|
newick file containing the reference tree in which query sequences will be placed *
|
bfastfile
file
|
file argument to the --bfast parameter *
|
|---|
binaryfile
file
|
file argument to the --binary parameter *
|
|---|
log
*.epa_info.log
file
|
log file from placement *.log
|
|---|
epang
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
./.
directory
|
directory in which EPA-NG was run |
jplace
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.epa_result.jplace.gz
file
|
gzipped file with placement information *.jplace.gz
|
versions_epang
tuple
${task.process}
string
|
The name of the process |
|---|---|
epa-ng
string
|
The name of the tool |
epa-ng --version | sed "s/EPA-ng v//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| epang | Massively parallel phylogenetic placement of genetic sequences | https://github.com/Pbdas/epa-ng |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:15:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fepang%2Fplace/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/epang/place/blobs/sha256:1b8b5781451ec27ef01bf167646c7fa055fa4cfe26d6e42f3a2e2d2a269bf14c |
| Size | 2.9 KB |
| Checksum | sha256:1b8b5781451ec27ef01bf167646c7fa055fa4cfe26d6e42f3a2e2d2a269bf14c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:15:04 (UTC) | 3 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:10:58 (UTC) | 3 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 18:58:50 (UTC) | 3 | 2.9 KB |