Nextflow Registry | nf-core/fastcov@0.0.0-0c7146d

nf-core/fastcov @ 0.0.0-0c7146d

Generate a coverage plot from one or more bam files

coverage bam map

Latest version: 0.0.0-6c4ed3a

Total downloads: 10

Source: nf-core/modules

Authors: @davidfischer

Maintainers: @davidfischer

Generate a coverage plot from one or more bam files

Add the following snippet to your workflow script to include this module.

include { FASTCOV } from 'nf-core/fastcov'

MIT License

Process

`Name`	`FASTCOV`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`bam` file	BAM file `*.bam`
`index` file	BAM index file `*.bai`

`file_ext` string	output plot file extension string, e.g. `png` or `pdf`

Output 3 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`log.txt` file	Log output redirected to a text file `log.txt`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 coverage_plot tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]` `*.{png,svg,pdf}`
`${prefix}.${file_ext}` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]` `*.{png,svg,pdf}`

Tool	Description	Homepage
fastcov	Generate a coverage plot from one or more bam files	https://github.com/RaverJay/fastcov/

Version	0.0.0-0c7146d
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	08 Apr 2026 18:59:22 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Ffastcov/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fastcov/blobs/sha256:a69a24ec84c22bc71f6e3060462762e794fd491911b4e0277acf3f51ac9631c0
Size	2.4 KB
Checksum	sha256:a69a24ec84c22bc71f6e3060462762e794fd491911b4e0277acf3f51ac9631c0
Downloads	4

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:15:28 (UTC)	3	2.4 KB
0.0.0-3fc6d40	22 Apr 2026 15:11:22 (UTC)	3	2.4 KB
0.0.0-0c7146d	08 Apr 2026 18:59:22 (UTC)	4	2.4 KB