nf-core/fgbio/copyumifromreadname @ 0.0.0-6c4ed3a
Summary
Copies the UMI at the end of a bam files read name to the RX tag.
Get started
Add the following snippet to your workflow script to include this module.
include { FGBIO_COPYUMIFROMREADNAME } from 'nf-core/fgbio/copyumifromreadname'
License
MIT License
Process
Name
|
FGBIO_COPYUMIFROMREADNAME |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
Sorted BAM/CRAM/SAM file *.{bam,cram,sam}
|
bai
file
|
Index for bam file *.{bai}
|
Output
3 channels
#1
bai
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bai
file
|
Index for bam file *.{bai}
|
#2
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.bam
file
|
Sorted BAM file *.{bam}
|
#3
versions_fgbio
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
fgbio
string
|
The tool name |
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fgbio | A set of tools for working with genomic and high throughput sequencing data, including UMIs | http://fulcrumgenomics.github.io/fgbio/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:17:14 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffgbio%2Fcopyumifromreadname/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fgbio/copyumifromreadname/blobs/sha256:ec42def51d59e3fe5d6e363572ada95474eeff1dffec15151e1af2f5105fe183 |
| Size | 2.8 KB |
| Checksum | sha256:ec42def51d59e3fe5d6e363572ada95474eeff1dffec15151e1af2f5105fe183 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:14 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:00:56 (UTC) | 3 | 2.8 KB |