Nextflow Modules
Showing module(s) with keyword "umi"
| Module | Keywords | Description |
|---|---|---|
| nf-core/fgbio/callduplexconsensusreads | umi duplex fgbio | Uses FGBIO CallDuplexConsensusReads to call duplex consensus sequences from reads generated from the same double-stranded source molecule. |
| nf-core/fgbio/copyumifromreadname | fgbio copy umi readname | Copies the UMI at the end of a bam files read name to the RX tag. |
| nf-core/fgbio/filterconsensusreads | fgbio filter consensus umi duplexumi | Uses FGBIO FilterConsensusReads to filter consensus reads generated by CallMolecularConsensusReads or CallDuplexConsensusReads. |
| nf-core/fgbio/zipperbams | fgbio umi unmapped ubam zipperbams | FGBIO tool to zip together an unmapped and mapped BAM to transfer metadata into the output BAM |
| nf-core/humid | umi fastq deduplication hamming-distance clustering | HUMID is a tool to quickly and easily remove duplicate reads from FastQ files, with or without UMIs. |
| nf-core/ultraplex | demultiplex fastq umi | Ultraplex is an all-in-one software package for processing and demultiplexing fastq files. |
| nf-core/umitools/group | umitools umi deduplication dedup clustering | Group reads based on their UMI and mapping coordinates |
| nf-core/universc | demultiplex align single-cell scRNA-Seq count umi | Module to run UniverSC an open-source pipeline to demultiplex and process single-cell RNA-Seq data |