nf-core/fgbio/sortbam @ 0.0.0-0c7146d
Summary
Sorts a SAM or BAM file. Several sort orders are available, including coordinate, queryname, random, and randomquery.
Get started
Add the following snippet to your workflow script to include this module.
include { FGBIO_SORTBAM } from 'nf-core/fgbio/sortbam'
License
MIT License
Process
Name
|
FGBIO_SORTBAM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false, collapse:false ] |
|---|---|
bam
file
|
The input SAM or BAM file to be sorted. *.{bam,sam}
|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Output SAM or BAM file. *.{bam,sam}
|
#2
versions_fgbio
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
fgbio
string
|
The tool name |
fgbio --version 2>&1 | tr -d "[:cntrl:]" | sed -e "s/^.*Version: //;s/\[.*$//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| fgbio | Tools for working with genomic and high throughput sequencing data. | https://github.com/fulcrumgenomics/fgbio |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:01:04 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffgbio%2Fsortbam/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fgbio/sortbam/blobs/sha256:497dbefc3d65e65afe1cb89c9ae82b5b078a75f6f08b6f892d47363c11833206 |
| Size | 2.6 KB |
| Checksum | sha256:497dbefc3d65e65afe1cb89c9ae82b5b078a75f6f08b6f892d47363c11833206 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:20 (UTC) | 4 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:04 (UTC) | 3 | 2.6 KB |