Nextflow Registry | nf-core/foldseek/easysearch@0.0.0-6c4ed3a

nf-core/foldseek/easysearch @ 0.0.0-6c4ed3a

Search for protein structural hits against a foldseek database of protein structures

protein structure comparisons

Latest version: 0.0.0-6c4ed3a

Total downloads: 8

Source: nf-core/modules

Authors: @vagkaratzas

Search for protein structural hits against a foldseek database of protein structures

Add the following snippet to your workflow script to include this module.

include { FOLDSEEK_EASYSEARCH } from 'nf-core/foldseek/easysearch'

MIT License

Process

`Name`	`FOLDSEEK_EASYSEARCH`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`pdb` file	Protein structure(s) in PDB, mmCIF or mmJSON format to compare against a foldseek database (also works with folder input) `*.{pdb,mmcif,mmjson}`

#2 tuple

`meta_db` map	Groovy Map containing sample information for the foldseek db e.g. `[ id:'test', single_end:false ]`
`db` directory	foldseek database from protein structures `*`

Output 2 channels

#1 aln tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`${meta.id}.m8` file	Structural comparisons file output Query, Target, Identity, Alignment length, Mismatches, Gap openings, Query start, Query end, Target start, Target end, E-value, Bit score `*.{m8}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
foldseek	Foldseek: fast and accurate protein structure search	https://search.foldseek.com/search

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:17:40 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Ffoldseek%2Feasysearch/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/foldseek/easysearch/blobs/sha256:c11ae7e41eec9f050bcf5ec40043c9147abc41b36fdf76affcf2cf48e17eeee0
Size	2.4 KB
Checksum	sha256:c11ae7e41eec9f050bcf5ec40043c9147abc41b36fdf76affcf2cf48e17eeee0
Downloads	3

Version	Date	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:17:40 (UTC)	3	2.4 KB
0.0.0-3fc6d40	22 Apr 2026 15:12:21 (UTC)	3	2.5 KB
0.0.0-0c7146d	08 Apr 2026 19:01:32 (UTC)	2	2.4 KB