Nextflow Modules
Showing module(s) with keyword "structure"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/foldcomp/compress | Process | protein structure compression | Efficient compression tool for protein structures |
| nf-core/foldcomp/decompress | Process | protein structure compression | Decompression tool for foldcomp compressed structures |
| nf-core/foldmason/createdb | Process | alignment MSA genomics structure | Creates a database for Foldmason. |
| nf-core/foldmason/easymsa | Process | alignment MSA genomics structure | Aligns protein structures using foldmason |
| nf-core/foldmason/msa2lddtreport | Process | alignment MSA genomics structure | Renders a visualization report using foldmason |
| nf-core/foldseek/createdb | Process | protein structure comparisons | Create a database from protein structures |
| nf-core/foldseek/easysearch | Process | protein structure comparisons | Search for protein structural hits against a foldseek database of protein structures |
| nf-core/gemmi/cif2json | Process | structure mmcif cif json structural-biology | Convert macromolecular structure files from mmCIF format to JSON format using gemmi. |
| nf-core/mtmalign/align | Process | alignment MSA genomics structure | Aligns protein structures using mTM-align |
| nf-core/pdb2pqr | Process | structure protein electrostatics pdb pqr | Convert PDB files to PQR format by assigning charge and radius parameters for electrostatics calculations (e.g. APBS input preparation). |
| nf-core/upp/align | Process | alignment MSA genomics structure | Aligns protein structures using UPP |
| seqera/evoef1 | Process | protein structure mutation energy binding evoef1 | Native EvoEF1 protein mutant modeling and energy calculations |
| seqera/evoef2 | Process | protein structure mutation energy binding evoef2 | Native EvoEF2 protein mutant modeling and energy calculations |