nf-core/fqtk @ 0.0.0-0c7146d
Summary
Demultiplex fastq files
Get started
Add the following snippet to your workflow script to include this module.
include { FQTK } from 'nf-core/fqtk'
License
MIT License
Name
|
FQTK |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
sample_sheet
file
|
Tsv file, with two columns sample_id and barcode *.{tsv}
|
fastq_folder
file
|
Directory containing fastq files that will be staged as 'input' folder *
|
fastq_readstructure_pairs
map
|
List of lists i.e. [[, ],...] |
metrics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
output/demux-metrics.txt
file
|
Demultiplexing summary stats; sample_id, barcode templates, frac_templates, ratio_to_mean, ratio_to_best output/demux-metrics.txt
|
sample_fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
output/*.fq.gz
file
|
Demultiplexed per-sample FASTQ files output/*R*.fastq.gz
|
versions_fqtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
fqtk
string
|
The name of the tool |
fqtk --version 2>&1 | cut -d " " -f2
eval
|
The expression to obtain the version of the tool |
most_frequent_unmatched
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
output/unmatched*.fq.gz
file
|
File containing unmatched fastq records output/unmatched*.fq.gz
|
| Tool | Description | Homepage |
|---|---|---|
| fqtk | A toolkit for working with FASTQ files, written in Rust. | https://github.com/fulcrumgenomics/fqtk |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:01:43 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ffqtk/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/fqtk/blobs/sha256:12d1a515158bad2927d66f30ab76a8595430b3a0c7de2aeff5e7cd184e1d8c15 |
| Size | 4.7 KB |
| Checksum | sha256:12d1a515158bad2927d66f30ab76a8595430b3a0c7de2aeff5e7cd184e1d8c15 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:17:45 (UTC) | 3 | 4.7 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:28 (UTC) | 4 | 4.7 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:01:43 (UTC) | 4 | 4.7 KB |