nf-core/gappa/examinegraft @ 0.0.0-3fc6d40
Summary
Grafts query sequences from phylogenetic placement on the reference tree
Get started
Add the following snippet to your workflow script to include this module.
include { GAPPA_EXAMINEGRAFT } from 'nf-core/gappa/examinegraft'
License
MIT License
Process
Name
|
GAPPA_EXAMINEGRAFT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
jplace
file
|
jplace file output from phylogenetic placement, e.g. EPA-NG, gzipped or not *.{jplace,jplace.gz}
|
Output
2 channels
#1
newick
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.newick
file
|
phylogenetic tree file in newick format *.newick
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gappa | Genesis Applications for Phylogenetic Placement Analysis | https://github.com/lczech/gappa |
| Version | 0.0.0-3fc6d40 |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 22 Apr 2026 15:12:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgappa%2Fexaminegraft/0.0.0-3fc6d40/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gappa/examinegraft/blobs/sha256:a85d4bbdd3fb911cde8a0cecd52f54ae74b42bd9c5d4031a747276ce17228fcc |
| Size | 2.2 KB |
| Checksum | sha256:a85d4bbdd3fb911cde8a0cecd52f54ae74b42bd9c5d4031a747276ce17228fcc |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:18:10 (UTC) | 3 | 2.2 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:12:49 (UTC) | 3 | 2.2 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:02:17 (UTC) | 3 | 2.2 KB |