nf-core/gatk4/createreadcountpanelofnormals @ 0.0.0-56a9b6d
Summary
Creates a panel of normals (PoN) for read-count denoising given the read counts for samples in the panel.
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_CREATEREADCOUNTPANELOFNORMALS } from 'nf-core/gatk4/createreadcountpanelofnormals'
License
MIT License
Process
Name
|
GATK4_CREATEREADCOUNTPANELOFNORMALS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
counts
file
|
Read counts in hdf5 or tsv format. *.{hdf5,tsv}
|
Output
2 channels
#1
pon
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.hdf5
file
|
Panel-of-normals file. *.{hdf5}
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-56a9b6d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 10 Apr 2026 15:00:31 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fcreatereadcountpanelofnormals/0.0.0-56a9b6d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gatk4/createreadcountpanelofnormals/blobs/sha256:8aa9ede2f315f54901d33b0ab0196ae69ecfb8daa73d7419a5fee40f5e665832 |
| Size | 3.4 KB |
| Checksum | sha256:8aa9ede2f315f54901d33b0ab0196ae69ecfb8daa73d7419a5fee40f5e665832 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:18:37 (UTC) | 3 | 3.4 KB | |
| 0.0.0-c24122a | 11 Apr 2026 15:00:08 (UTC) | 3 | 3.4 KB | |
| 0.0.0-56a9b6d | 10 Apr 2026 15:00:31 (UTC) | 3 | 3.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:02:56 (UTC) | 3 | 3.4 KB |