nf-core/gatk4/gatherbqsrreports @ 0.0.0-6c4ed3a
Summary
Gathers scattered BQSR recalibration reports into a single file
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_GATHERBQSRREPORTS } from 'nf-core/gatk4/gatherbqsrreports'
License
MIT License
Process
Name
|
GATK4_GATHERBQSRREPORTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
table
file
|
File(s) containing BQSR table(s) *.table
|
Output
2 channels
#1
table
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.table
file
|
File containing joined BQSR table *.table
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:18:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fgatherbqsrreports/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gatk4/gatherbqsrreports/blobs/sha256:135860346b7d58f2e798b947114ccb1bd89239dda2a4d9f505fb889cfe973812 |
| Size | 2.6 KB |
| Checksum | sha256:135860346b7d58f2e798b947114ccb1bd89239dda2a4d9f505fb889cfe973812 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:18:50 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:03:14 (UTC) | 4 | 2.5 KB |