nf-core/gatk4/mergemutectstats @ 0.0.0-6c4ed3a
Summary
Merges mutect2 stats generated on different intervals/regions
Get started
Add the following snippet to your workflow script to include this module.
include { GATK4_MERGEMUTECTSTATS } from 'nf-core/gatk4/mergemutectstats'
License
MIT License
Process
Name
|
GATK4_MERGEMUTECTSTATS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
stats
file
|
Stats file *.{stats}
|
Output
2 channels
#1
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf.gz.stats
file
|
Stats file *.vcf.gz.stats
|
#2
versions_gatk4
tuple
${task.process}
string
|
The name of the process |
|---|---|
gatk4
string
|
The name of the tool |
gatk --version | sed -n '/GATK.*v/s/.*v//p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| gatk4 | Genome Analysis Toolkit (GATK4) | https://gatk.broadinstitute.org/hc/en-us |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:20:16 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgatk4%2Fmergemutectstats/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gatk4/mergemutectstats/blobs/sha256:6cf7e72aecfc94eebdb5734de2c011133e6d063f3bfcbda2fc226239b4747787 |
| Size | 2.6 KB |
| Checksum | sha256:6cf7e72aecfc94eebdb5734de2c011133e6d063f3bfcbda2fc226239b4747787 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:20:16 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:04:23 (UTC) | 3 | 2.6 KB |