nf-core/goatools/findenrichment @ 0.0.0-6c4ed3a
Summary
Find enriched GO terms in a list of genes
Get started
Add the following snippet to your workflow script to include this module.
include { GOATOOLS_FINDENRICHMENT } from 'nf-core/goatools/findenrichment'
License
MIT License
Process
Name
|
GOATOOLS_FINDENRICHMENT |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
study_list
file
|
Plain text file with one study gene identifier per line *.{txt,tsv,csv}
|
population_list
file
|
Plain text file with one background population gene identifier per line *.{txt,tsv,csv}
|
annotation
file
|
Gene-to-GO association file used by GOATOOLS *
|
obo
file
|
Gene Ontology OBO file *.obo
|
|---|
goslim
file
|
GO slim mapping file used for slim-specific enrichment summaries *.obo
|
|---|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
GO enrichment analysis table generated by GOATOOLS find_enrichment *.tsv
|
#2
versions_goatools
tuple
${task.process}
string
|
The name of the process |
|---|---|
goatools
string
|
The name of the tool |
goatools --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| goatools | Python scripts to find enrichment of GO terms | https://github.com/tanghaibao/goatools |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:21:49 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgoatools%2Ffindenrichment/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/goatools/findenrichment/blobs/sha256:591eae9fd8f582c6ad038eea9c2bf6c9ef49c8b0e5fdb5f4e488ee12a705b7e0 |
| Size | 2.6 KB |
| Checksum | sha256:591eae9fd8f582c6ad038eea9c2bf6c9ef49c8b0e5fdb5f4e488ee12a705b7e0 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:21:49 (UTC) | 3 | 2.6 KB | |
| 0.0.0-5d5b444 | 21 Apr 2026 15:00:55 (UTC) | 3 | 2.6 KB |