Nextflow Modules
Showing module(s) with keyword "enrichment"
| Module | Keywords | Description |
|---|---|---|
| nf-core/decoupler/decoupler | enrichment omics biological activity functional analysis prior knowledge | decoupler is a package containing different statistical methods to extract biological activities from omics data within a unified framework. It allows to flexibly test any enrichment method with any prior knowledge resource and incorporates methods that take into account the sign and weight. It can be used with any omic, as long as its features can be linked to a biological process based on prior knowledge. For example, in transcriptomics gene sets regulated by a transcription factor, or in phospho-proteomics phosphosites that are targeted by a kinase. |
| nf-core/goatools/findenrichment | goatools enrichment ontology geneontology go genomics | Find enriched GO terms in a list of genes |
| nf-core/gprofiler2/gost | gene set analysis enrichment gprofiler2 gost gene set | runs a functional enrichment analysis with gprofiler2 |
| nf-core/gsea/gsea | gene set analysis enrichment gsea gene set | run the Broad Gene Set Enrichment tool in GSEA mode |
| nf-core/homer/findpeaks | annotation peaks enrichment | Find peaks with HOMER suite |