nf-core/gstama/polyacleanup @ 0.0.0-0c7146d
Summary
Helper script, remove remaining polyA sequences from Full Length Non Chimeric reads (Pacbio isoseq3)
Get started
Add the following snippet to your workflow script to include this module.
include { GSTAMA_POLYACLEANUP } from 'nf-core/gstama/polyacleanup'
License
MIT License
Name
|
GSTAMA_POLYACLEANUP |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Full Length Non Chimeric reads in fasta format *.{fa,fasta}
|
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_tama.fa.gz
file
|
The Full Length Non Chimeric reads cleaned from remaining polyA tails. The sequences are in FASTA format compressed with gzip. *_tama.fa.gz
|
tails
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_tama_tails.fa.gz
file
|
A gzip compressed FASTA file of trimmed polyA tails. *_tama_tails.fa.gz
|
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*_tama_polya_flnc_report.txt.gz
file
|
A text file describing the number of polyA tails removed and their length. Compressed with gzip. *_tama_polya_flnc_report.txt.gz
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| gstama | Gene-Switch Transcriptome Annotation by Modular Algorithms | https://github.com/sguizard/gs-tama |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:07:08 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgstama%2Fpolyacleanup/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gstama/polyacleanup/blobs/sha256:5537b9a86967c52c2548dca458e342b1a824649a97629eb81197851cc9f2313c |
| Size | 4.4 KB |
| Checksum | sha256:5537b9a86967c52c2548dca458e342b1a824649a97629eb81197851cc9f2313c |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:22:59 (UTC) | 3 | 4.5 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:14:36 (UTC) | 3 | 4.5 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:07:08 (UTC) | 2 | 4.4 KB |