nf-core/gt/gff3 @ 0.0.0-6c4ed3a
Summary
GenomeTools gt-gff3 utility to parse, possibly transform, and output GFF3 files
Get started
Add the following snippet to your workflow script to include this module.
include { GT_GFF3 } from 'nf-core/gt/gff3'
License
MIT License
Process
Name
|
GT_GFF3 |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gff3
file
|
Input gff3 file *.{gff,gff3}
|
Output
3 channels
#1
gt_gff3
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gt.gff3
file
|
Parsed gff3 file produced only if there is no parsing error *.gt.gff3
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
error_log
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.error.log
file
|
Error log if gt-gff3 failed to parse the input gff3 file *.error.log
|
| Tool | Description | Homepage |
|---|---|---|
| gt | The GenomeTools genome analysis system | https://genometools.org/index.html |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:23:00 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fgt%2Fgff3/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gt/gff3/blobs/sha256:94c2f7eaea8a353ab7846f5a77db343bd6d2418dec052cda9dbfdcc3607acfd4 |
| Size | 2.6 KB |
| Checksum | sha256:94c2f7eaea8a353ab7846f5a77db343bd6d2418dec052cda9dbfdcc3607acfd4 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:00 (UTC) | 4 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:15:37 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:07:10 (UTC) | 3 | 2.6 KB |