Nextflow Modules
Showing module(s) with keyword "gff3"
| Module | Kind | Keywords | Description |
|---|---|---|---|
| nf-core/bcftools/csq | Process | annotation gff gff3 protein functional vcf bcf bcftools | bcftools Haplotype-aware consequence caller |
| nf-core/dshbio/filtergff3 | Process | gff3 filter feature | Filter features in gzipped GFF3 format |
| nf-core/dshbio/splitgff3 | Process | gff3 split feature | Split features in gzipped GFF3 format |
| nf-core/gt/gff3 | Process | genome gff3 annotation | GenomeTools gt-gff3 utility to parse, possibly transform, and output GFF3 files |
| nf-core/gt/gff3validator | Process | genome gff3 annotation validation | GenomeTools gt-gff3validator utility to strictly validate a GFF3 file |
| nf-core/gt/stat | Process | genome gff3 annotation statistics stats | GenomeTools gt-stat utility to show statistics about features contained in GFF3 files |
| nf-core/liftoff | Process | genome annotation gff3 gtf liftover | Uses Liftoff to accurately map annotations in GFF or GTF between assemblies of the same, or closely-related species |