Nextflow Registry | nf-core/gtdbtk/gtdbtoncbimajorityvote@0.0.0-6c4ed3a

nf-core/gtdbtk/gtdbtoncbimajorityvote @ 0.0.0-6c4ed3a

Converts the output classifications of GTDB-TK from GTDB taxonomy to NCBI taxonomy

Latest version: 0.0.0-6c4ed3a

Total downloads: 7

Source: nf-core/modules

Authors: @prototaxites

Maintainers: @prototaxites

Converts the output classifications of GTDB-TK from GTDB taxonomy to NCBI taxonomy

Add the following snippet to your workflow script to include this module.

include { GTDBTK_GTDBTONCBIMAJORITYVOTE } from 'nf-core/gtdbtk/gtdbtoncbimajorityvote'

MIT License

Process

`Name`	`GTDBTK_GTDBTONCBIMAJORITYVOTE`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`gtdbtk_outdir` file	All the output files from GTDB-Tk `*`
`gtdbtk_prefix` string	The prefix used when running gtdbtk/classifywf. If using output from the nf-core module, this defaults to "${meta.id}". `*`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`ar53_metadata` file	GTDB ar53 metadata file (from https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/) `*.tsv.gz`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`bac120_metadata` file	GTDB bac120 metadata file (from https://data.ace.uq.edu.au/public/gtdb/data/releases/latest/) `*.tsv.gz`

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]` `*.ncbi.tsv`
`*.ncbi.tsv` map	TSV map for input genomes, mapping GTDB classification taxonomy to NCBI taxonomic lineages `*.ncbi.tsv`

#2 versions_gtdbtoncbimajorityvote tuple

`${task.process}` string	The name of the process
`gtdb_to_ncbi_majority_vote.py` string	The name of the tool
`gtdb_to_ncbi_majority_vote.py -v 2>&1 \| grep -Eo '[0-9]+(\.[0-9]+)+' \| head -n 1` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
gtdbtk	GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes based on the Genome Database Taxonomy GTDB.	https://ecogenomics.github.io/GTDBTk/

Version	0.0.0-6c4ed3a
Commit ID	6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date	23 Apr 2026 15:23:08 (UTC)
Download URL	https://registry.nextflow.io/api/v1/modules/nf-core%2Fgtdbtk%2Fgtdbtoncbimajorityvote/0.0.0-6c4ed3a/download
OCI Store URL	https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/gtdbtk/gtdbtoncbimajorityvote/blobs/sha256:daeb95e94c16692e9cb8f3aad0e95164daed44cec4c9f68a3d7f2d3e78b1ba83
Size	3.3 KB
Checksum	sha256:daeb95e94c16692e9cb8f3aad0e95164daed44cec4c9f68a3d7f2d3e78b1ba83
Downloads	4

Version	Date	Status	Downloads	Size
0.0.0-6c4ed3a	23 Apr 2026 15:23:08 (UTC)		4	3.3 KB
0.0.0-0c7146d	08 Apr 2026 19:07:21 (UTC)		3	3.3 KB