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Showing module(s) with keyword "taxonomy"

Module Keywords Description
nf-core/bbmap/sendsketch taxonomy classification sketch query fastq fasta Compares query sketches to reference sketches hosted on a remote server via the Internet.
nf-core/ganon/buildcustom ganon metagenomics profiling taxonomy k-mer database Build ganon database using custom reference sequences.
nf-core/ganon/classify ganon metagenomics profiling taxonomy k-mer classification classify Classify FASTQ files against ganon database
nf-core/ganon/report ganon metagenomics profiling taxonomy k-mer classification report Generate a ganon report file from the output of ganon classify
nf-core/ganon/table ganon metagenomics profiling taxonomy k-mer classification report table Generate a multi-sample report file from the output of ganon report runs
nf-core/gappa/examineassign phylogeny phylogenetic placement classification taxonomy assigns taxonomy to query sequences in phylogenetic placement output
nf-core/gtdbtk/gtdbtoncbimajorityvote gtdb taxonomy ncbi taxonomy taxonomic classification conversion taxonomy classification genome taxonomy database bacteria archaea Converts the output classifications of GTDB-TK from GTDB taxonomy to NCBI taxonomy
nf-core/kaiju/kaiju2krona taxonomy visualisation krona chart metagenomics Convert Kaiju's tab-separated output file into a tab-separated text file which can be imported into Krona.
nf-core/krona/kronadb database taxonomy krona KronaTools Update Taxonomy downloads a taxonomy database
nf-core/krona/ktimportkrona plot taxonomy interactive html visualisation krona chart Collect multiple krona reports into a single html file
nf-core/krona/ktimporttaxonomy plot taxonomy interactive html visualisation krona chart KronaTools Import Taxonomy imports taxonomy classifications and produces an interactive Krona plot.
nf-core/krona/ktimporttext plot taxonomy interactive html visualisation krona chart metagenomics Creates a Krona chart from text files listing quantities and lineages.
nf-core/krona/ktupdatetaxonomy database taxonomy krona visualisation KronaTools Update Taxonomy downloads a taxonomy database
nf-core/metacache/build genomics metagenomics taxonomy short reads long reads kmer k-mer metacache build reference Taxonomic profiling database building with MetaCache
nf-core/metamaps/classify metamaps long reads metagenomics taxonomy Strain-level metagenomic assignment
nf-core/metamaps/mapdirectly metamaps long reads metagenomics taxonomy Maps long reads to a metamaps database
nf-core/mmseqs/createtaxdb