nf-core/hicexplorer/hicpca @ 0.0.0-0c7146d
Summary
Computes PCA eigenvectors for a Hi-C matrix.
Get started
Add the following snippet to your workflow script to include this module.
include { HICEXPLORER_HICPCA } from 'nf-core/hicexplorer/hicpca'
License
MIT License
Process
Name
|
HICEXPLORER_HICPCA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', bin:50000 ] |
|---|---|
matrix
file
|
HiCExplorer matrix in h5 format |
Output
4 channels
#1
pca1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', bin:50000 ] |
|---|---|
${prefix}_pca1.$format
file
|
PCA1 file |
#2
pca2
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', bin:50000 ] |
|---|---|
${prefix}_pca2.$format
file
|
PCA2 file |
#3
results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', bin:50000 ] |
|---|---|
${prefix}_*
file
|
Outputs of hicPCA |
#4
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| hicexplorer | Set of programs to process, analyze and visualize Hi-C and capture Hi-C data | https://hicexplorer.readthedocs.io |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:09:03 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhicexplorer%2Fhicpca/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hicexplorer/hicpca/blobs/sha256:077250e41ab1e6f95a881422f115ee35178c6f87fd08a6943a587895fc06bb4a |
| Size | 2.5 KB |
| Checksum | sha256:077250e41ab1e6f95a881422f115ee35178c6f87fd08a6943a587895fc06bb4a |
| Downloads | 2 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:23:50 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:16 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:03 (UTC) | 2 | 2.5 KB |