nf-core/hisat2/extractsplicesites @ 0.0.0-6c4ed3a
Summary
Extracts splicing sites from a gtf files
Get started
Add the following snippet to your workflow script to include this module.
include { HISAT2_EXTRACTSPLICESITES } from 'nf-core/hisat2/extractsplicesites'
License
MIT License
Process
Name
|
HISAT2_EXTRACTSPLICESITES |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
gtf
file
|
Reference gtf annotation file *.{gtf}
|
Output
2 channels
#1
txt
tuple
meta
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
*.splice_sites.txt
file
|
Splice sites in txt file *.txt
|
#2
versions_hisat2
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
hisat2
string
|
The tool name |
hisat2 --version | grep -o "version [^ ]*" | cut -d " " -f 2
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| hisat2 | HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) to a population of human genomes as well as to a single reference genome. | https://daehwankimlab.github.io/hisat2/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:24:01 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhisat2%2Fextractsplicesites/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hisat2/extractsplicesites/blobs/sha256:b584fc55eeaa9786a5963d66250ecce72d098ac41b0e97f17f5ac9fb7b2abb8e |
| Size | 2.4 KB |
| Checksum | sha256:b584fc55eeaa9786a5963d66250ecce72d098ac41b0e97f17f5ac9fb7b2abb8e |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:01 (UTC) | 3 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:17 (UTC) | 4 | 2.4 KB |