Nextflow Modules
Showing module(s) with keyword "splicing"
| Module | Keywords | Description |
|---|---|---|
| nf-core/ctatsplicing/prepgenomelib | splicing cancer rna rnaseq | Reference preparation for CTAT-splicing |
| nf-core/ctatsplicing/startocancerintrons | splicing cancer rna rnaseq | Detection and annotation of aberrant splicing isoforms in cancer transcriptomes |
| nf-core/hisat2/extractsplicesites | splicing gtf genome reference | Extracts splicing sites from a gtf files |
| nf-core/regtools/junctionsextract | regtools leafcutter RNA-seq splicing | Extract exon-exon junctions from an RNAseq BAM file. The output is a BED file in the BED12 format. |
| nf-core/rseqc/junctionannotation | junctions splicing rnaseq | compare detected splice junctions to reference gene model |
| nf-core/rseqc/junctionsaturation | junctions splicing rnaseq | compare detected splice junctions to reference gene model |
| nf-core/segemehl/align | alignment circrna splicing fusions | A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection |
| nf-core/segemehl/index | index circrna splicing fusions | Generate genome indices for segemehl align |