nf-core/hmmer/eslreformat @ 0.0.0-6c4ed3a
Summary
reformats sequence files, see HMMER documentation for details. The module requires that the format is specified in ext.args in a config file, and that this comes last. See the tools help for possible values.
Get started
Add the following snippet to your workflow script to include this module.
include { HMMER_ESLREFORMAT } from 'nf-core/hmmer/eslreformat'
License
MIT License
Process
Name
|
HMMER_ESLREFORMAT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
seqfile
file
|
Sequences, aligned or not, in any supported format *
|
postprocessing_script
string
|
Post processing script in shell, e.g., '| sed "/^>/!s/-//g"' | *
|
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
seqreformated
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.*.gz
file
|
Reformatted sequence file *.*.gz
|
| Tool | Description | Homepage |
|---|---|---|
| hmmer | Biosequence analysis using profile hidden Markov models | http://hmmer.org/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:24:15 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhmmer%2Feslreformat/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hmmer/eslreformat/blobs/sha256:99f150102f56a17ee71da484df1c27f653d18161e98c4da79c6c8220af3ce03c |
| Size | 2.8 KB |
| Checksum | sha256:99f150102f56a17ee71da484df1c27f653d18161e98c4da79c6c8220af3ce03c |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:15 (UTC) | 3 | 2.8 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:29 (UTC) | 3 | 2.8 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:09:37 (UTC) | 3 | 2.8 KB |