Nextflow Modules
Showing module(s) with keyword "hmmer"
| Module | Keywords | Description |
|---|---|---|
| nf-core/hmmer/eslalimask | hmmer alignment mask | Mask multiple sequence alignments |
| nf-core/hmmer/eslreformat | sort hmmer reformat | reformats sequence files, see HMMER documentation for details. The module requires that the format is specified in ext.args in a config file, and that this comes last. See the tools help for possible values. |
| nf-core/hmmer/hmmbuild | search hidden Markov model HMM hmmer hmmsearch | create an hmm profile from a multiple sequence alignment |
| nf-core/hmmer/hmmfetch | hidden Markov model HMM hmmer hmmfetch | extract hmm from hmm database file or create index for hmm database |
| nf-core/hmmer/hmmpress | hidden Markov model HMM hmmer hmmpress hmmscan | compress and index profile database for hmmscan |
| nf-core/hmmer/hmmrank | hmmer hmmsearch rank | R script that scores output from multiple runs of hmmer/hmmsearch |
| nf-core/hmmer/hmmsearch | Hidden Markov Model HMM hmmer hmmsearch | search profile(s) against a sequence database |
| nf-core/macsyfinder/search | genomics protein macromolecular systems hmmer search | Search for macromolecular systems in protein datasets using MacSyFinder |