nf-core/hpsuissero @ 0.0.0-6c4ed3a
Summary
Serotype prediction of Haemophilus parasuis assemblies
Get started
Add the following snippet to your workflow script to include this module.
include { HPSUISSERO } from 'nf-core/hpsuissero'
License
MIT License
Process
Name
|
HPSUISSERO |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
Assembly in FASTA format *.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz,faa,faa.gz}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
Tab-delimited serotype prediction *.{tsv}
|
#2
versions_hpsuissero
tuple
${task.process}
string
|
The name of the process |
|---|---|
hpsuissero
string
|
The name of the tool |
1.0.1
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| hpsuissero | Rapid Haemophilus parasuis serotyping pipeline for Nanpore data | https://github.com/jimmyliu1326/HpsuisSero |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 76dfaba27ac4eacd80cdac5ba28985ee2646b0bd |
| Release Date | 23 Apr 2026 15:24:39 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fhpsuissero/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/hpsuissero/blobs/sha256:6f846f73d0c20757f90bbbe039c7467c167918d731ffa01505c084d7c866df56 |
| Size | 2.4 KB |
| Checksum | sha256:6f846f73d0c20757f90bbbe039c7467c167918d731ffa01505c084d7c866df56 |
| Downloads | 9 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-76dfaba | 27 May 2026 15:00:50 (UTC) | 0 | 2.3 KB | ↔ | |
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:39 (UTC) | 9 | 2.4 KB | ↔ | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:39 (UTC) | 8 | 2.4 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:07 (UTC) | 7 | 2.3 KB | - |