nf-core/icountmini/metagene @ 0.0.0-6c4ed3a
Summary
Plot a metagene of cross-link events/sites around various transcriptomic landmarks.
Get started
Add the following snippet to your workflow script to include this module.
include { ICOUNTMINI_METAGENE } from 'nf-core/icountmini/metagene'
License
MIT License
Process
Name
|
ICOUNTMINI_METAGENE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
BED file of crosslinks |
segmentation
file
|
A iCount segmentation file *.{gtf}
|
|---|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
metagene_*/*plot_data.tsv
file
|
Metagene table *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| icount | Computational pipeline for analysis of iCLIP data | https://icount.readthedocs.io/en/latest/ |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:24:50 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Ficountmini%2Fmetagene/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/icountmini/metagene/blobs/sha256:f2d8e423b0fe5ac56acbde9eda17958dd8db654cb44aa7a575b4f8a79f9386e5 |
| Size | 2.4 KB |
| Checksum | sha256:f2d8e423b0fe5ac56acbde9eda17958dd8db654cb44aa7a575b4f8a79f9386e5 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:50 (UTC) | 3 | 2.4 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:46 (UTC) | 2 | 2.4 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:22 (UTC) | 4 | 2.4 KB |