Nextflow Modules
Showing module(s) with keyword "iCLIP"
| Module | Keywords | Description |
|---|---|---|
| nf-core/clippy | iCLIP eCLIP CLIP | Runs the Clippy CLIP peak caller |
| nf-core/icountmini/metagene | iCLIP gtf genomics | Plot a metagene of cross-link events/sites around various transcriptomic landmarks. |
| nf-core/icountmini/peaks | iCLIP bed genomics | Runs iCount peaks on a BED file of crosslinks |
| nf-core/icountmini/segment | iCLIP gtf genomics | Formats a GTF file for use with iCount sigxls |
| nf-core/icountmini/sigxls | CLIP iCLIP bed genomics | Runs iCount sigxls on a BED file of crosslinks |
| nf-core/icountmini/summary | iCLIP gtf genomics | Report proportion of cross-link events/sites on each region type. |
| nf-core/peka | motif CLIP iCLIP genomics k-mer | Runs PEKA CLIP peak k-mer analysis |
| nf-core/pureclip | iCLIP eCLIP CLIP | PureCLIP is a tool to detect protein-RNA interaction footprints from single-nucleotide CLIP-seq data, such as iCLIP and eCLIP. |