nf-core/idemux @ 0.0.0-0c7146d
Summary
Demultiplex paired-end FASTQ files from QuantSeq-Pool
Get started
Add the following snippet to your workflow script to include this module.
include { IDEMUX } from 'nf-core/idemux'
License
MIT License
Process
Name
|
IDEMUX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'NVQ', lane:1 ] |
|---|---|
reads
file
|
List of input FastQ files Undetermined_S*.fastq.gz
|
samplesheet
file
|
Input samplesheet *.{csv}
|
Output
4 channels
#1
fastq
tuple
meta
file
|
Demultiplexed sample FASTQ files *.fastq.gz
|
|---|---|
[!undetermined]*.fastq.gz
file
|
Demultiplexed sample FASTQ files *.fastq.gz
|
#2
stats
demultipexing_stats.tsv
file
|
Demultiplexing Stats demultipexing_stats.tsv
|
|---|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
undetermined
tuple
meta
file
|
Demultiplexed sample FASTQ files *.fastq.gz
|
|---|---|
undetermined_R?.fastq.gz
file
|
Optional undetermined sample FASTQ files Undetermined_R?.fastq.gz
|
| Tool | Description | Homepage |
|---|---|---|
| idemux | A Lexogen tool for demultiplexing and index error correcting fastq files. Works with Lexogen i7, i5 and i1 barcodes. | https://github.com/Lexogen-Tools/idemux |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 08 Apr 2026 19:10:32 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fidemux/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/idemux/blobs/sha256:5259a5b93371303a5e27a9215b629bdd380c4f799cb151f64468e3b170930815 |
| Size | 9.0 KB |
| Checksum | sha256:5259a5b93371303a5e27a9215b629bdd380c4f799cb151f64468e3b170930815 |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:24:56 (UTC) | 3 | 9.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:53 (UTC) | 4 | 9.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:32 (UTC) | 4 | 9.0 KB |