nf-core/igvreports @ 0.0.0-6c4ed3a
Summary
A Python application to generate self-contained HTML reports for variant review and other genomic applications
Get started
Add the following snippet to your workflow script to include this module.
include { IGVREPORTS } from 'nf-core/igvreports'
License
MIT License
Name
|
IGVREPORTS |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
sites
file
|
VCF, BED, MAF, BEDPE, or generic tab delimited file of genomic variant sites |
tracks
file
|
List of any set of files of the types that IGV can display, eg BAM/CRAM, GTF/GFF, VCF, BED, etc |
tracks_indices
file
|
List of indices for the tracks |
meta2
map
|
Groovy Map containing genome information e.g. [ id:'genome_name' ] |
|---|---|
fasta
file
|
Reference fasta file *.{fasta,fa}
|
fai
file
|
Reference fasta file index *.{fai}
|
report
tuple
meta
file
|
html report with a table of genomic sites and an embedded IGV genome browser for viewing data for each site *.{html}
|
|---|---|
*.html
file
|
html report with a table of genomic sites and an embedded IGV genome browser for viewing data for each site *.{html}
|
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| igvreports | Creates self-contained html pages for visual variant review with IGV (igv.js). | https://github.com/igvteam/igv-reports |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:25:00 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Figvreports/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/igvreports/blobs/sha256:6b1c5d315e5fb66ed3e0d66b92c413c248d4c9749a6b34f75313e59a418b8d97 |
| Size | 2.9 KB |
| Checksum | sha256:6b1c5d315e5fb66ed3e0d66b92c413c248d4c9749a6b34f75313e59a418b8d97 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:25:00 (UTC) | 1 | 2.9 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:16:55 (UTC) | 1 | 2.9 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:10:37 (UTC) | 1 | 2.9 KB |