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nf-core/interproscan @ 0.0.0-0c7146d

Produces protein annotations and predictions from an amino acids FASTA file

annotation fasta protein dna interproscan
Latest version: 0.0.0-6c4ed3a
Total downloads: 9
Source: nf-core/modules
Authors: @toniher @mahesh-panchal
Maintainers: @toniher @vagkaratzas @mahesh-panchal

Summary

Produces protein annotations and predictions from an amino acids FASTA file

Get started

Add the following snippet to your workflow script to include this module.

include { INTERPROSCAN } from 'nf-core/interproscan'

License

MIT License

Process
Name INTERPROSCAN
Input 2 channels
#1 tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
fasta file

Input fasta file containing the amino acid or dna query sequences

 *.{fa,fasta,fa.gz,fasta.gz}
interproscan_database directory

Path to the interproscan database (untarred http://ftp.ebi.ac.uk/pub/software/unix/iprscan/5/${version_major}-${version_minor}/interproscan-${version_major}-${version_minor}-64-bit.tar.gz)
Output 5 channels
#1 tsv tuple
meta map

Groovy Map containing sample information
*.tsv file

Tab separated file containing with detailed hits

 *.{tsv}
#2 xml tuple
meta map

Groovy Map containing sample information
*.xml file

XML file containing with detailed hits

 *.{xml}
#3 gff3 tuple
meta map

Groovy Map containing sample information
*.gff3 file

GFF3 file containing with detailed hits

 *.{gff3}
#4 json tuple
meta map

Groovy Map containing sample information
*.json file

JSON file containing with detailed hits

 *.{json}
#5 versions_interproscan tuple
${task.process} string

The name of the process
interproscan string

The name of the tool
interproscan.sh --version | sed "1!d; s/.*version //" eval

The expression to obtain the version of the tool
Tool Description Homepage
interproscan InterPro integrates together predictive information about proteins function from a number of partner resources https://www.ebi.ac.uk/interpro/search/sequence/
Version 0.0.0-0c7146d
Commit ID 6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date 08 Apr 2026 19:10:54 (UTC)
Download URL https://registry.nextflow.io/api/v1/modules/nf-core%2Finterproscan/0.0.0-0c7146d/download
OCI Store URL https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/interproscan/blobs/sha256:7f0f5eb6f7377708499a7f870381ac4f51628c43a6caf4acc3b9114ce3fa9aba
Size 5.4 KB
Checksum sha256:7f0f5eb6f7377708499a7f870381ac4f51628c43a6caf4acc3b9114ce3fa9aba
Downloads 3
Version Date Status Downloads Size
0.0.0-6c4ed3a 23 Apr 2026 15:25:08 (UTC) 3 5.4 KB
0.0.0-3fc6d40 22 Apr 2026 15:17:02 (UTC) 3 5.5 KB
0.0.0-0c7146d 08 Apr 2026 19:10:54 (UTC) 3