nf-core/isoseq3/tag @ 0.0.0-6c4ed3a
Summary
Extract UMI and cell barcodes
Get started
Add the following snippet to your workflow script to include this module.
include { ISOSEQ3_TAG } from 'nf-core/isoseq3/tag'
License
MIT License
Process
Name
|
ISOSEQ3_TAG |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
bam
file
|
BAM file, one full-length CCS file generated by lima *.5p--3p.bam
|
design
string
|
Barcoding design. Specifies which bases to use as cell/molecular barcodes. ^(?:\d{1,2}[UBGX]-)+T$|^(?:\d{1,2}[UBGX]-)+T(?:-\d{1,2}[UBGX])+$|^T(?:-\d{1,2}[UBGX])+$
|
|---|
Output
3 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.flt.bam
file
|
BAM file with full-length tagged reads *.flt.bam
|
#2
pbi
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.flt.bam.pbi
file
|
Pacbio index file of full-length tagged reads *.flt.bam.pbi
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| isoseq3 | Iso-Seq - Scalable De Novo Isoform Discovery | https://github.com/PacificBiosciences/IsoSeq/tree/master |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:26:10 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fisoseq3%2Ftag/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/isoseq3/tag/blobs/sha256:2585342302f398af0b0a2678fa5ccd1f7133a976f9c60cdf483c75259bf440b4 |
| Size | 2.6 KB |
| Checksum | sha256:2585342302f398af0b0a2678fa5ccd1f7133a976f9c60cdf483c75259bf440b4 |
| Downloads | 3 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:26:10 (UTC) | 3 | 2.6 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:18:13 (UTC) | 3 | 2.6 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:11:11 (UTC) | 4 | 2.5 KB |