nf-core/liftoff @ 0.0.0-6c4ed3a
Summary
Uses Liftoff to accurately map annotations in GFF or GTF between assemblies of the same, or closely-related species
Get started
Add the following snippet to your workflow script to include this module.
include { LIFTOFF } from 'nf-core/liftoff'
License
MIT License
Name
|
LIFTOFF |
|---|
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
target_fa
file
|
Target assembly in fasta format (can be gzipped) *.{fa,fa.gz,fasta,fasta.gz,fas,fas.gz,fsa,fsa.gz}
|
ref_fa
file
|
Reference assembly in fasta format (can be gzipped) *.{fa,fa.gz,fasta,fasta.gz,fas,fas.gz,fsa,fsa.gz}
|
|---|
ref_annotation
file
|
Reference assembly annotations in gtf or gff3 format *.{gtf,gff3}
|
|---|
ref_db
file
|
Name of feature database; if not specified, the -g argument must be provided and a database will be built automatically |
|---|
gff3
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.gff3
file
|
Lifted annotations for the target assembly in gff3 format *.gff3
|
unmapped_txt
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.unmapped.txt
file
|
List of unmapped reference annotations *.unmapped.txt
|
polished_gff3
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.polished.gff3
file
|
Polished lifted annotations for the target assembly in gff3 format *.polished.gff3
|
versions_liftoff
tuple
${task.process}
string
|
The name of the process |
|---|---|
liftoff
string
|
The name of the tool |
liftoff --version | sed "s/v//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| liftoff | Liftoff is a tool that accurately maps annotations in GFF or GTF between assemblies of the same, or closely-related species | https://github.com/agshumate/Liftoff |
| Version | 0.0.0-6c4ed3a |
|---|---|
| Commit ID | 6c4ed3a220310b905a1fc9d04f05be2e0837142b |
| Release Date | 23 Apr 2026 15:27:44 (UTC) |
| Download URL | https://registry.nextflow.io/api/v1/modules/nf-core%2Fliftoff/0.0.0-6c4ed3a/download |
| OCI Store URL | https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/liftoff/blobs/sha256:803fb0610af5ef2e280ad7d8552c8cf3d0e514c0c2f6a48e8ee4832c4fe2ef4e |
| Size | 3.0 KB |
| Checksum | sha256:803fb0610af5ef2e280ad7d8552c8cf3d0e514c0c2f6a48e8ee4832c4fe2ef4e |
| Downloads | 4 |
| Version | Date | Status | Downloads | Size |
|---|---|---|---|---|
| 0.0.0-6c4ed3a | 23 Apr 2026 15:27:44 (UTC) | 4 | 3.0 KB | |
| 0.0.0-3fc6d40 | 22 Apr 2026 15:19:19 (UTC) | 4 | 3.0 KB | |
| 0.0.0-0c7146d | 08 Apr 2026 19:14:04 (UTC) | 3 | 3.0 KB |