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nf-core/macrel/contigs @ 0.0.0-0c7146d

A tool that mines antimicrobial peptides (AMPs) from (meta)genomes by predicting peptides from genomes (provided as contigs) and outputs all the predicted anti-microbial peptides found.

AMP antimicrobial peptides genome mining metagenomes peptide prediction
Latest version: 0.0.0-6c4ed3a
Total downloads: 9
Source: nf-core/modules
Authors: @darcy220606
Maintainers: @darcy220606

Summary

A tool that mines antimicrobial peptides (AMPs) from (meta)genomes by predicting peptides from genomes (provided as contigs) and outputs all the predicted anti-microbial peptides found.

Get started

Add the following snippet to your workflow script to include this module.

include { MACREL_CONTIGS } from 'nf-core/macrel/contigs'

License

MIT License

Process
Name MACREL_CONTIGS
Input 1 channel
#1 tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
fasta file

A fasta file with nucleotide sequences.

 *.{fasta,fa,fna,fasta.gz,fa.gz,fna.gz}
Output 6 channels
#1 smorfs tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*/*.smorfs.faa.gz file

A zipped fasta file containing aminoacid sequences showing the general gene prediction information in the contigs.

 *.smorfs.faa.gz
#2 all_orfs tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*/*.all_orfs.faa.gz file

A zipped fasta file containing amino acid sequences showing the general gene prediction information in the contigs.

 *.all_orfs.faa.gz
#3 log_file tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*/*_log.txt file

A log file containing the information pertaining to the run.

 *_log.txt
#4 versions
versions.yml file

File containing software versions

 versions.yml
#5 readme_file tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*/*.md file

A readme file containing tool specific information (e.g. citations, details about the output, etc.).

 *.md
#6 amp_prediction tuple
meta map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
*/*.prediction.gz file

A zipped file, with all predicted amps in a table format.

 *.prediction.gz
Tool Description Homepage
macrel A pipeline for AMP (antimicrobial peptide) prediction https://macrel.readthedocs.io/en/latest/
Version 0.0.0-0c7146d
Commit ID 6c4ed3a220310b905a1fc9d04f05be2e0837142b
Release Date 08 Apr 2026 19:14:47 (UTC)
Download URL https://registry.nextflow.io/api/v1/modules/nf-core%2Fmacrel%2Fcontigs/0.0.0-0c7146d/download
OCI Store URL https://public.cr.seqera.io/v2/nextflow/plugin/modules/nf-core/macrel/contigs/blobs/sha256:0c7590f0b8c7c3784cc10b5aadf19de3e4f970900cd67f113c9d9b31c04d83c8
Size 3.0 KB
Checksum sha256:0c7590f0b8c7c3784cc10b5aadf19de3e4f970900cd67f113c9d9b31c04d83c8
Downloads 2
Version Date Status Downloads Size
0.0.0-6c4ed3a 23 Apr 2026 15:28:12 (UTC) 4 3.0 KB
0.0.0-3fc6d40 22 Apr 2026 15:19:43 (UTC) 3 3.0 KB
0.0.0-0c7146d 08 Apr 2026 19:14:47 (UTC) 2 3.0 KB